Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQRSNILEITAGLFVLVFTIFLAFFAINKLSDIKKSYKGCYKIYGFFSNANGIEVGDSVKISGVNIGSITGISLDKATYVARLDMCISKDIKLPIDSSALITSSGVVGSKFVNISPGSGIKLISNGGKIEYTQSEANVGGIIDKILNMFSK
2CP0 Chain:A ((13-53))
------------------------------------------------SALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKAVDASGPSSG--------------------
General information:
TITO was launched using:
RESULT:
Template:
2CP0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14181 for 194 contacts (-73.1/contact) +
2D Compatibility (PS) -4564 + (NN) -2133 + (LL) 5100
1D Compatibility (HY) -1200 + (ID) 350
Total energy: -17328.0 ( -89.32 by residue)
QMean score : 0.037
(partial model without unconserved sides chains):
PDB file :
Tito_2CP0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CP0-query.scw
PDB file :
Tito_Scwrl_2CP0.pdb
: