Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSDLWNFFTEVPSE-GYIVESSYCTDSGCSNYIGNIDLSNIREFNLVSPDRKITKKFEANIIDFFEP-RVHLSMDDSGKKINLDIAPE--NCSATKDGFLCIDKNEQDYKLKILIKKS
2L8O Chain:A ((15-104))
--EKVWKYWNEPAHIMKWCQASPEWH---VPAAQNDLKAGGTFTTTMAAKDGSMSFDFGGVYDQVKTNDLIEYTIGD-GRKVRIVFTHTGDTTNIVESFDPEETNPRELQQSGWQAILN
General information:
TITO was launched using:
RESULT:
Template:
2L8O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25186 for 467 contacts (-53.9/contact) +
2D Compatibility (PS) -8989 + (NN) -240 + (LL) -124
1D Compatibility (HY) -3200 + (ID) 400
Total energy: -38139.0 ( -81.67 by residue)
QMean score : 0.182
(partial model without unconserved sides chains):
PDB file :
Tito_2L8O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L8O-query.scw
PDB file :
Tito_Scwrl_2L8O.pdb
: