Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATKSNIIMKVAKR-----HPLLDRIVIAAIVNRFFEILSSTLEHHNRVEIRGFGSFSIRSY-------NLKETSHLMLQKFAKNQYFKTYFRSSKKLSDLINE
2NP2 Chain:A ((8-105))
KVTKSDIVDQIALNIKNNNL-KLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKRKGRLNARNPQTGEYVKV-----LDHHVAYFRPGKDLKERVWG
General information:
TITO was launched using:
RESULT:
Template:
2NP2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20367 for 413 contacts (-49.3/contact) +
2D Compatibility (PS) -9164 + (NN) -1208 + (LL) 384
1D Compatibility (HY) -4800 + (ID) 1300
Total energy: -36455.0 ( -88.27 by residue)
QMean score : 0.360
(partial model without unconserved sides chains):
PDB file :
Tito_2NP2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NP2-query.scw
PDB file :
Tito_Scwrl_2NP2.pdb
: