Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYSAVIVKPKRNVFAVLDIGTTKIICLIVKVSGNFNYKITGTGYKIAEGINGGLITDIKYASYSISSTIGLAEQVSEETIDQIYVNIAGCGILSFNVHNEIIAANHEISDRDIKRVIFQTFEK-Y--IEENVIIHNIPLRYHLDDMTDIREVSGLYGKRLSADVNVVTASRPALTNIENCITNNSGISMAGCIASAYSAGFACLS--EDEKELGTAIVDIGGGCTAIGIFKRSKLIYANSIPIGGVHITRDIAYGLCTSIEHAERIKILYGSTVVTSIDENEYITVQSNENDEQARIPKSELVDIIRPRIEEILELVKEQFRK-----QKDPINKVVITGGTSRLASMKEIASYIFNKQVRIGCPES-YG-GL---D--GEYNKNPVFSAAIGSIKLIVDTFYKNNPDMLGQDGKISKLYHWVKSKVTV |
| 2YCH Chain:A ((11-375)) | ---------PRVEALGLEIGASALKLVEVSGNP-PALKALASRPTPPGLLMEGMVAEPAALAQEIKELLLEA----RTRKRYVVTALSNLAVILRP----IQVP--KMPLKEMEEAVRWEAERYIPFPI-EVVLDFAPLTPLSEVQE-----------GEQVQVMVAAARQEAVAGVLEALR-GAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLAVRVLTLSGKDFTEAIARSFNLDLLAAEEVKRTY-----------------------------GRIYDAIRPVLVELTQELRRSLEFFRIQL---SPEVGYLLGGGSKLRGLASLLTDTLGVNLEPVNPWEAVAVDPKRFESEQLQEIGPEFAVALGLALRGVEP---------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -236263 for 2602 contacts (-90.8/contact) +
2D Compatibility (PS) -34412 + (NN) -6441 + (LL) 5184
1D Compatibility (HY) -5600 + (ID) 2400
Total energy: -279932.0 ( -107.58 by residue)
QMean score : 0.448
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