Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLPVVHLLPNNDLAQFNYRHVKIDGILSDIELYVFAGQSGYHALSPMLLTTGRYMLVNKGIVREKEEKKAKIAKVVADGVLYCDSSKSKSWLIKNDIALNTWFTLSTEEISNELGIELEKCILWQKGFSGKLAIQPMKHLEYAITWFALSLIWLIMCIAYYRQNKCHLSS
1TU3 Chain:C ((42-99))
--------------AAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN---------------------------
General information:
TITO was launched using:
RESULT:
Template:
1TU3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6868 for 262 contacts (-26.2/contact) +
2D Compatibility (PS) -6259 + (NN) -1244 + (LL) 2736
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -14935.0 ( -57.00 by residue)
QMean score : -0.153
(partial model without unconserved sides chains):
PDB file :
Tito_1TU3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TU3-query.scw
PDB file :
Tito_Scwrl_1TU3.pdb
: