Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKNIKNILSITELLSGWL-LHDFANSMNGIMFGLEELEAGNQNDASTHREALLLLKESSDDLIYKHKV---MKQAYSSSADNRSFSQTKLNIE-NYLLKKK
1AHY Chain:B ((205-283))
----------------GWLPLFDFA--YQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSSPPA
General information:
TITO was launched using:
RESULT:
Template:
1AHY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 12222 for 367 contacts (33.3/contact) +
2D Compatibility (PS) -7509 + (NN) 2669 + (LL) 1280
1D Compatibility (HY) -2400 + (ID) 1450
Total energy: 4812.0 ( 13.11 by residue)
QMean score : 0.042
(partial model without unconserved sides chains):
PDB file :
Tito_1AHY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AHY-query.scw
PDB file :
Tito_Scwrl_1AHY.pdb
: