Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDVTILTIFPEMFPGFLNYSLAGKALEKKIWNLQVINIRFFAKDRHLTVDHIPYGGGAGMIMRPDVVGDAVDSVLSTHKDTK-FIYMTPSGTKFDQSIARELVGFPHITILCGRFEGIDQRVIDEYTPYELSIGDYILSGGEPAAMVILDVCVRLLPGVVNNSGSITEESFSYSGGVLEYPQYTRPKQWRKHRVPKILLSGNHKKISDWRQKQSQVITKRRRPELLDGEINDKFT
4MCB Chain:B ((3-226))
---IGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGKQASAEEDSF--ADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQ
General information:
TITO was launched using:
RESULT:
Template:
4MCB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -186583 for 1587 contacts (-117.6/contact) +
2D Compatibility (PS) -23632 + (NN) -7012 + (LL) 328
1D Compatibility (HY) -18400 + (ID) 4550
Total energy: -239849.0 ( -151.13 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_4MCB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MCB-query.scw
PDB file :
Tito_Scwrl_4MCB.pdb
: