Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRRITLNSNFMFGASDIKSLPNESAPEIAFAGRSNVGKSSLINLLINSKKAARVSSKPGCTRQINFYSMYNDKFRLVDLPGYGCSHASKDETIQYLGLVEYYLIHRRNLRRVFVLIDSKVRLKEIDKDFIYWLTYNNINFDVVLTKIDKVDRENLDAIIESTRKWINNESVSIRQISVRVKYEMTKVRDEFFKFTR
1SVW Chain:B ((6-164))
--------SEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY-IINDELHFVDVPGYGF------EREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI
General information:
TITO was launched using:
RESULT:
Template:
1SVW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97552 for 1129 contacts (-86.4/contact) +
2D Compatibility (PS) -16036 + (NN) -4338 + (LL) 1044
1D Compatibility (HY) -10400 + (ID) 3050
Total energy: -130332.0 ( -115.44 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_1SVW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SVW-query.scw
PDB file :
Tito_Scwrl_1SVW.pdb
: