Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGYVINIQAIKKQIELSPQSCGVYQMIGDKDKVLYVGKAKNLKSRLSNYLRYENLSERTKFMLSQVIKVEVLVTENEIDALLLEARLIKSLKPPYNIIFKDGRSYPYIVISKHNYPRIAQYRGKFKKGEFHYYGPFISVAAVKQTMLSLQKTFLLRVCSDQYFASTKRPCIEYQIKRCSAPCVGKITKDDYCQSVKQTRDTLLGRNEKVKKQLSSTMEKCSKEENYELAAIYRDRLKFLEQIQMQSMDFSFEKDADFFGIARKEDLACIGVLSFRNKDNYGSTPYFVENCSDHPDDEILSTFLIKLYNSANIPPAQIYVSDFVTGKEIIEQALHNVTHKPIKALHAKSKKEHNLLKFVYDNSQRSLEQKLTDYKNNLEKFEELSKIFLLPNIPKRVEVYDNSHTSGNQQVGVMVVAGKEGFLK-SEYRKFTIKGEILGDDYEMMREVLTRRFSNNTKDVVPDFLLIDGGPGHISVVQNVLNTLNINVPFACMAKGSYRNAGNERFYMPNREDFTLKNDSKVMLYLQSLRNEAHRFAITSHRKKRDKQFFVSPLSKITSIGDKRKNALMSHFGSVENISKASLAEIQNVARISKELAEVILKHVDNKE |
2NRV Chain:B ((7-216)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EALEELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVF-EDGFPKKGDYRRYKIEQD-HPDDYESIRTVVKRRYS---KHPLPNLLFVDGGIGQVNAAIEALKEIGKDCPVVGLAKKE------ETVVFENRE-IHLPHDHPVLRLLVQIRDETHRFAVSYHRKRREKESLRSVLD-VPGIGPIRKKKLIEHFGSLENIRSASLEEIARVIG-STEIARRVL------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2NRV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -109333 for 1560 contacts (-70.1/contact) +
2D Compatibility (PS) -22888 + (NN) -10550 + (LL) 27528
1D Compatibility (HY) -17200 + (ID) 4200
Total energy: -136643.0 ( -87.59 by residue)
QMean score : 0.623
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