Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKALIFTSLVVVVLIVVTFLYKNNETNDLQVVNVYSSRKEELVRTLFDEFTRNTGIKVRYIIDDYSQLLSRME---NGSGTDVFLTADAVNLILAKKRGLLSQVNSEILKRAIPEKFRDSEGYWFGLTKRTRILVYNKES-VDPKDLSTYEDLANKKWKGKILVRSSTSPYNRSLIAFMIANNGFEKTKEWVSGIVSNMARKPSGGDTNQIYAVAAGEGDIAIVNSYYFARILSSERENKKNVANKLGVFFPNHDSNGVMVNISGAAVTKNAKNRENAIALLEFLVSKQAQELYAKKNQEYPIIEGVEVSNILKFWGDYPQSDLPLSELEKHLFEAVMIADECKWK |
1Y4T Chain:D ((4-318)) | --------------------------------LNIYSARHYNADFEIIKKFEEKTGIKVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIPAHLRDKDKEWFAITKRARIIAYNKNTNIDISKMKNYEDLAKAEFKGEIVMRSATAPYSKTLLASIIANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIGLLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSPEIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEVGFR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1Y4T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -153771 for 2756 contacts (-55.8/contact) +
2D Compatibility (PS) -34948 + (NN) -26354 + (LL) 3568
1D Compatibility (HY) -23200 + (ID) 6150
Total energy: -240855.0 ( -87.39 by residue)
QMean score : 0.626
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