Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIQIEETPNPNTLKFLPGFAILNERETADFSNPDEIKNSKLAADLFQIEHVIRVFFGHDFISVTKSDGISWDILKVEILTTVMDHFTSGGKALDRKGVNDNNIPDEEFFDENDIEIVNRIKELMENYIKPAVAQDGGDIKFRGYKDGIVYVELQGACSGCPSAAITLKQGVQNMLCYHIPEVSGIETTL
1VEH Chain:A ((7-86))
-------------------------------------------------------------------------------------------------------------GSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVS
General information:
TITO was launched using:
RESULT:
Template:
1VEH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47802 for 515 contacts (-92.8/contact) +
2D Compatibility (PS) -8395 + (NN) -1678 + (LL) 6536
1D Compatibility (HY) -8000 + (ID) 2150
Total energy: -61489.0 ( -119.40 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_1VEH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VEH-query.scw
PDB file :
Tito_Scwrl_1VEH.pdb
: