Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMIFRLLFLLVFISVNSYAVIKQDLSNNHYIQKINEITSKELLLPLPDDKLLGDSKAPILMIEYASLTCYHCSLFHREVFPEIKKKYIDTGKMLYIFRHFPLDY-RGLKAAMLSYCYE--KQEDYFNFNKAVFNSIDSWNYSNLSDLTVLQKVAALSNLKQDTFNRCINDKEV-----MDKIINDKSLAINKLGIMATPIFFIKLNNDRSHTEPNKIRHEGYKAQEYFTNVIDRLYEKAIVK
3BCI Chain:A ((14-178))
--------------------------------------------------------GKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDE-NKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKD-KKIAKDNHIKTTPTAFINGEK-----------VEDPYDYESYEKLLKD--------
General information:
TITO was launched using:
RESULT:
Template:
3BCI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109680 for 1218 contacts (-90.0/contact) +
2D Compatibility (PS) -16202 + (NN) -5313 + (LL) 5992
1D Compatibility (HY) -3600 + (ID) 1600
Total energy: -130403.0 ( -107.06 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_3BCI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BCI-query.scw
PDB file :
Tito_Scwrl_3BCI.pdb
: