Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEYQGVNTVKKDRKPITITANAVERIRYLLDQKQYTNLERSEEAIGIRVLI---------KQKGCSGLKYDIEYAYDIHPL-ESVIEESCSDGQ-KVKVLIDPKSVMFIL-GSEMDYVEEKFSSGFVFKNPNEKGKCGCGESFHV
2QGO Chain:A ((4-105))
--------------LNIKFTDNAVDYLKRREIL-----------DKILILITDDGGGKYSI--------HFSIIWLDKVDPDYPVKIAN-----EQNVKIYTSDFDKTMLGPNMVMDYN----AGSLSLSSDEGLLDGSVDIGNGA
General information:
TITO was launched using:
RESULT:
Template:
2QGO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42807 for 523 contacts (-81.8/contact) +
2D Compatibility (PS) -8793 + (NN) -2859 + (LL) 1904
1D Compatibility (HY) -2800 + (ID) 650
Total energy: -56005.0 ( -107.08 by residue)
QMean score : 0.382
(partial model without unconserved sides chains):
PDB file :
Tito_2QGO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QGO-query.scw
PDB file :
Tito_Scwrl_2QGO.pdb
: