Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEGQRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQRSNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAYHK
1O6D Chain:A ((1-147))
LRVRIAVIGKL-DGFIKEGIKHYEKFLRRFCKPEVLEIKRVHRGSIEE------IVRKETEDLTNRILPGSFVMVMDKRGEEVSSEEFADFLKDLEMK-GKDITILIGGPYGLNEEIFAKAHRVFSLSKMTFTHGMTVLIVLEQIFRAFKIIHGE----
General information:
TITO was launched using:
RESULT:
Template:
1O6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81736 for 1127 contacts (-72.5/contact) +
2D Compatibility (PS) -16218 + (NN) -7480 + (LL) 756
1D Compatibility (HY) -13600 + (ID) 2350
Total energy: -120628.0 ( -107.03 by residue)
QMean score : 0.691
(partial model without unconserved sides chains):
PDB file :
Tito_1O6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1O6D-query.scw
PDB file :
Tito_Scwrl_1O6D.pdb
: