Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYKIDDKQDQRLVNDTLNQIDIPEGYILHSDQGSVYTSYAYYQLCEEKGIIRSMSRKGTPADNAPIESFHSSLKSETLYINNQLNSSNHIVIDIVEKYIKNYNNNQIQQKLGYLSPVKYRELIA
3OYM Chain:B ((174-231))
---------------NVLTSIAIPK--VIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSSGKVERKHSDIK--------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3OYM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 497 for 290 contacts (1.7/contact) +
2D Compatibility (PS) -6290 + (NN) -4823 + (LL) 4688
1D Compatibility (HY) -2400 + (ID) 1000
Total energy: -9328.0 ( -32.17 by residue)
QMean score : 0.306
(partial model without unconserved sides chains):
PDB file :
Tito_3OYM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OYM-query.scw
PDB file :
Tito_Scwrl_3OYM.pdb
: