Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDIVNIVIMLLIGVFGGFISGLVGVGGAIIIYPAILLLPPLFGAPAYSAYIASGLTSSQVFFSTLSGSLKARKKTEFSPQLVLYMGGGMIIGSMLGAFLANLFDATFVNTVYIIIALLALTLMFIKVKPSSEKSSFNKYLLVIIGLFIGIISGIVGAGGAFIIIPILLVLFKLPMNTVVANSIVIAFISSIGAFVIKLIQGYIPLYDALFLIIGSIIFAPIGLKLSKKVPNIIQKWIISILIVFAIVQLIL |
1COL Chain:A ((178-201)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLAAVVGALIDDKFADALNNEIIR---------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1COL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -3719 for 111 contacts (-33.5/contact) +
2D Compatibility (PS) -2156 + (NN) 2871 + (LL) 20144
1D Compatibility (HY) -2000 + (ID) 250
Total energy: 14890.0 ( 134.14 by residue)
QMean score : 0.073
|
|
|