Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKCIVGLGNIGKRFELTRHNIGFEVVDYILEKNNFSL-DKQKFKGAYTIERMNGDKVLFIEPMTMMNLSGEAVAPIMDYYNVNPEDLIVLYDDLDLEQGQVRLRQKGSAGGHNGMKSIIKMLGTDQFKRIRIGVGRPTNGMTVPDYVLQRFSNDEMVTMEKVIEHAARAIEKFVETSRFDHVMNEFNGEVK
4JWK Chain:A ((4-189))
ISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIGPN-FHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQ-GQVPQAMNQINA---
General information:
TITO was launched using:
RESULT:
Template:
4JWK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126185 for 1557 contacts (-81.0/contact) +
2D Compatibility (PS) -19277 + (NN) -1923 + (LL) 532
1D Compatibility (HY) -12400 + (ID) 3300
Total energy: -162553.0 ( -104.40 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_4JWK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JWK-query.scw
PDB file :
Tito_Scwrl_4JWK.pdb
: