Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTKIMGILNVTPDSFSDGGKFNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVGFDVKISVDTFRSEVAEACLKLGVDMINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAYGIMKGVRAVRVHNVELNAKLAKGIDFLKENENARHNLS
1AD1 Chain:B ((1-266))
-TKTKIMGILNVTP----------NVESAVTRVKAMMDEGADIIDVGGVST-----MITVEEELNRVLPVVEAIVGFDVKISVDTFRSEVAEACLKLGVDIINDQWAGLYDHRMFQVVAKYDAEIVLMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAYGIMKGVRAVRVHNVELNAKLAKGIDFLKENENARHNFS
General information:
TITO was launched using:
RESULT:
Template:
1AD1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118818 for 2168 contacts (-54.8/contact) +
2D Compatibility (PS) -27932 + (NN) -21887 + (LL) -160
1D Compatibility (HY) -35600 + (ID) 12050
Total energy: -216447.0 ( -99.84 by residue)
QMean score : 0.760
(partial model without unconserved sides chains):
PDB file :
Tito_1AD1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AD1-query.scw
PDB file :
Tito_Scwrl_1AD1.pdb
: