Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNYGIPQNAIITIAGTVGVGKSTLTQALADKLNFKTSFENVEHNPYLDKFYSDFERWSFHLQIYFLAERFKEQKRMFEYGGGFVQDRSIYEDVDIFAKMHEEEGTMSKEDFKTYSDLFNAMVMTPYFPKP---DVMIYLECNYDEVIDRIIERGREMEINTDPEYWKKLFKRYDDWINSFNACPVVRININEYDIHKDPESLNPMIDKIARIIQTYRQVDTR
2JAS Chain:E ((4-169))
-----------IAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQA-KNLENIIFDRTLLED-PIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENL----LSFDIVIYLRVSTKTAISRIKKRGRSEELLIGEEYWETLNKNYEEF----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JAS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43226 for 1128 contacts (-38.3/contact) +
2D Compatibility (PS) -17100 + (NN) -5315 + (LL) 3856
1D Compatibility (HY) -15200 + (ID) 2900
Total energy: -79885.0 ( -70.82 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_2JAS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JAS-query.scw
PDB file :
Tito_Scwrl_2JAS.pdb
: