Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
3QWD Chain:D ((3-192))
--LIPTVIE------RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGG--GQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP---
General information:
TITO was launched using:
RESULT:
Template:
3QWD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125408 for 1420 contacts (-88.3/contact) +
2D Compatibility (PS) -20012 + (NN) -8881 + (LL) 668
1D Compatibility (HY) -25600 + (ID) 9100
Total energy: -188333.0 ( -132.63 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_3QWD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QWD-query.scw
PDB file :
Tito_Scwrl_3QWD.pdb
: