Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEIKTLTNNDFNEYKRLVSTVNE---EFTQDSHYSQTMTDTLIHDILNQGS----P-KCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNND--KSINSELINFIINYARQ-NNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
3R9F Chain:A ((22-187))
-ITLLYPALKYAEELYLLINQNKINFIKSMA-WP-AFVNNISDSVSFIEQSMIDNQNEKALILFIKYKTKIAGVVSFNIIDH--ANKTAYIG-YWLGANFQGKGIVTNAINKLIQEYGDSGVIKRFVIKCIVDNKKSNATALRCGFTLEGVLQKAEILNGVSYDQNIYSKVI---
General information:
TITO was launched using:
RESULT:
Template:
3R9F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80068 for 1100 contacts (-72.8/contact) +
2D Compatibility (PS) -15932 + (NN) 2368 + (LL) 524
1D Compatibility (HY) -5200 + (ID) 950
Total energy: -99258.0 ( -90.23 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_3R9F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R9F-query.scw
PDB file :
Tito_Scwrl_3R9F.pdb
: