Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNTNKFLLIPYLLWMVIFIIVPVVLLIYFSFLDINGHFSFTNYQQIFTT-K----YLKMFAYSILYAALITIITLAISYPAAYYITRS-K-FQNILLMIMIIPTWINLLLKTYAFIGLLSH-DGVINQFFHLFNLPSFNL----LFTTGAFLVVASYIYIPFMILPIFNSMKAIPNNLLQASSDLGASPFYTFRKVIMPLTKEGVMTGIQVTFIPSLSLFMITRLIAGNK------------VINIGTAIEEQFLT---IQNYGMGSTIAIFLIVFMAFILIITKSSNGRG
3RLF Chain:F ((258-503))
-------------------------------------TTGWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAI---------
General information:
TITO was launched using:
RESULT:
Template:
3RLF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -202321 for 1505 contacts (-134.4/contact) +
2D Compatibility (PS) -22259 + (NN) -1140 + (LL) 3868
1D Compatibility (HY) -22000 + (ID) 2100
Total energy: -245952.0 ( -163.42 by residue)
QMean score : 0.293
(partial model without unconserved sides chains):
PDB file :
Tito_3RLF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RLF-query.scw
PDB file :
Tito_Scwrl_3RLF.pdb
: