Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRKRIKLVAEKNYDQISSIEEQEFIGDLIQVNPNVKAQSILDITSDSVFHKTGIARGHVLFAQANSLCVALIKQPTVLTHESSIQFIEKVKLNDTVRAEARVVNQ--TAKHYYVEVKSYVKHTLVFKGNFKMFYDKRG
2F41 Chain:A ((73-183))
-----------------------------------------------------------------------EVIGEIIDLELDDQAISILEIKQEHVFSRNQIARGHHLFAQANSLAVAVI---LALTASADIRFTRQVKQGERVVAKAKVTAVEKEKGRTVVEVNSYVGEEIVFSGRFDMY-----
General information:
TITO was launched using:
RESULT:
Template:
2F41.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74215 for 799 contacts (-92.9/contact) +
2D Compatibility (PS) -10700 + (NN) 4291 + (LL) 6024
1D Compatibility (HY) -10400 + (ID) 2400
Total energy: -87400.0 ( -109.39 by residue)
QMean score : 0.435
(partial model without unconserved sides chains):
PDB file :
Tito_2F41.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F41-query.scw
PDB file :
Tito_Scwrl_2F41.pdb
: