Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYQPHYFQEVRKAQQESYSPYSQFKVGAYLKTKDGRTFYGTNVENASYPLSICAERASLVSAISQGYRPGDFESITVTVDADKPSSPCGACRQVLKELCDDDMPVYMTNHKGDMVMMTVAELLPFGFSGKDLE
1UX0 Chain:B ((5-130))
-----ELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEQTALFKAVSEG--DTEFQMLAVAADTPGPVSPCGACRQVISELCTKDVIVVLTNLQGQIKEMTVEELLPGAFSSEDL-
General information:
TITO was launched using:
RESULT:
Template:
1UX0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41500 for 997 contacts (-41.6/contact) +
2D Compatibility (PS) -14174 + (NN) -9649 + (LL) 548
1D Compatibility (HY) -10800 + (ID) 3050
Total energy: -78625.0 ( -78.86 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_1UX0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UX0-query.scw
PDB file :
Tito_Scwrl_1UX0.pdb
: