Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHNNFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYEH
3DV2 Chain:C ((2-188))
-RKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYE-
General information:
TITO was launched using:
RESULT:
Template:
3DV2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157670 for 1405 contacts (-112.2/contact) +
2D Compatibility (PS) -20146 + (NN) -8852 + (LL) 252
1D Compatibility (HY) -18400 + (ID) 3500
Total energy: -208316.0 ( -148.27 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_3DV2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DV2-query.scw
PDB file :
Tito_Scwrl_3DV2.pdb
: