Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNYLESLYWIHERTKFGIKPGVKRMEWMLAQFNNPQNNIKGIHVGGTNGKGSTVAYLRTALVENGYEVGTFTSPFIETFNERISLNGVPISNDAIVELVSRIKPVSEMMERETDLGVATEFEIITAMMFLYFGEIHPVDFVIVEAGLG--IKNDS-TNVFTPVLSILTSIGLDHTDILGGTYLDIARDKGAIIKP---NVPVIYAVKNEDALKYVRERAIEQHAKPIELDREI-----VVVSQ---N-D-EFTYRYKDYELETIILSMLGEHQKQNAALAITALIELNEQGLIELDFNKMIDGIE-SVRWTGRIEQVH-DKPLIIL--DGAHNSESIDALIDTIKQYHDKEKVDILFSAIN------GKPINEMVKHLSLI-AHTFYATEFDFPKALRKEEIVGSIENDEIQLVDDYVEFIKN----Y---QGDTLVITGSLYFISEVKSKLDFEAL |
| 1GG4 Chain:A ((100-439)) | --------------------------------------ARVVALTGSSGKTSVKEMTAAILSQCGNTL---YTAG--NLNNDI-------------------------------GVPMTLLRL----------TP-EYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLA---------SLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQ-SVIG--SRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTP-TGSVDVLLPLPGRHNIANALAAAALSMSV------GATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEM-P-GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQS-HA-----ISTASGV--GEHFADKTALITRLKLLIAEQQVITILVKGSRSAAM----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GG4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -11872 for 2285 contacts (-5.2/contact) +
2D Compatibility (PS) -28739 + (NN) 14754 + (LL) 8420
1D Compatibility (HY) 20000 + (ID) 1200
Total energy: 1363.0 ( 0.60 by residue)
QMean score : 0.107
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