Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKNIVIKSMAALAILTSVTGINAAVVEETQQIANAEKNVTQVKDTNNFPYNGVVSFKDATGFVIGKNTIITNKHVSKDYKV-GDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIEEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKDNILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIEQ
4MVN Chain:D ((1-200))
------------------------------------EKNVKEITDATKEPYNSVVAFVGGTGVVVGKNTIVTNKHIAKSNDIFKNRVSAHHSSKGKGGGNYDVKDIVEYPGKEDLAIVHVHETSTE----GLNFNKNVSYTKFADGAKVKDRISVIGYPKGAQTKYKMFESTGTINHISGTFMEFDAYAQPGNSGSPVLNSKHELIGILYAGSGKDESEKNFGVYFTPQLKEFIQNNIEK
General information:
TITO was launched using:
RESULT:
Template:
4MVN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39984 for 1741 contacts (-23.0/contact) +
2D Compatibility (PS) -21867 + (NN) -10967 + (LL) 3600
1D Compatibility (HY) -17200 + (ID) 5250
Total energy: -91668.0 ( -52.65 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_4MVN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MVN-query.scw
PDB file :
Tito_Scwrl_4MVN.pdb
: