Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLYTSYGTYGFLHQIKINNPTHQLFQFSASDTSVIFEETDGETVLKSPSIYEVIKEIGEFSEHHFYCAIFIPSTEDHAYQLEKKLISVDDNFRNFGGFKSYRLLRPAKG-TTYKIYFGFADRHAYEDFKQSDAFNDHFSKDALSHYFGSSGQHSSYFERYLYPIKE
3E8O Chain:A ((18-111))
----------------------------------------------------------------TMVISHGTLSASAEHAAHLRQLLVHIAQATRQEDGCLLYLVSEDLSQPGHFLITEHWDNLGAMHTHLALPGVTQAIDAL------KHLNVTDLKITAYEA----
General information:
TITO was launched using:
RESULT:
Template:
3E8O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34671 for 622 contacts (-55.7/contact) +
2D Compatibility (PS) -10145 + (NN) -3244 + (LL) 5008
1D Compatibility (HY) -2000 + (ID) 500
Total energy: -45552.0 ( -73.23 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_3E8O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E8O-query.scw
PDB file :
Tito_Scwrl_3E8O.pdb
: