Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRKRARIIYNPTSGKELFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAAGGQLTQVSYETPSKLKSIVGPFAYYIKGFEMLPQMKAVDLRIEYDGNVFQ-GEALLFFLGL--TNS----MAGFEKLVPDAKLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFTDLQLNVDGEYGGK-LPANFLNLERHIDVFAPNDIVNEELINNDHVDDNLIEE |
| 1YT5 Chain:A ((1-242)) | --MKIAILYREEREK-----EGEFLKEKISK-EHEV--IEFG------EANAP-GRVTADLIVVVGGDGTVLKAAKKAA---DGTPMVGFKAGRLGFLTS-YT-LDEIDRFLEDLRNWNFREE------TRWFIQIESELGNHLALNDVTLERD----------------LSGKMVEIEVEVEHHSSMWFFADGVVISTPTGSTAYSLSIGG----PIIFPECEVLEISPIAPQFFL-----------T-----RSVVIPSNFKVVVESQRDINMLVDGVLTGKTKRIEVKKSRRYVRILRPPEYD----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YT5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -92935 for 1876 contacts (-49.5/contact) +
2D Compatibility (PS) -25206 + (NN) -4757 + (LL) 5976
1D Compatibility (HY) -4400 + (ID) 1800
Total energy: -123122.0 ( -65.63 by residue)
QMean score : 0.284
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