Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYKRLFISRVILIFALILVISTPNVLAESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNVGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG
3BYY Chain:B ((2-235))
----------------------------SQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNVW--WPGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTK--
General information:
TITO was launched using:
RESULT:
Template:
3BYY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49477 for 1798 contacts (-27.5/contact) +
2D Compatibility (PS) -25796 + (NN) -13637 + (LL) 3476
1D Compatibility (HY) -32000 + (ID) 11550
Total energy: -128984.0 ( -71.74 by residue)
QMean score : 0.671
(partial model without unconserved sides chains):
PDB file :
Tito_3BYY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BYY-query.scw
PDB file :
Tito_Scwrl_3BYY.pdb
: