Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKSKRLEIVSTIVKKHKIYKKEQIISYIEEYFGVRYSATTIAKDLKELNIYRVPIDCETWIYKAINNQTEQEMREKFRHYCEHEVLSSIINGSYIIVKTSPGFAQGINYFIDQLNIEEILGTVSGNDTTLILTASNDMAEYVYAKLFK
1B4B Chain:C ((13-68))
--------------------------------------------------------------------------------------------GNLLVLRTLPGNAHAIGVLLDNLDWDEIVGTICGDDTCLIICRTPKDAKKVSNQLL-
General information:
TITO was launched using:
RESULT:
Template:
1B4B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36737 for 366 contacts (-100.4/contact) +
2D Compatibility (PS) -6243 + (NN) -4471 + (LL) 8616
1D Compatibility (HY) -6000 + (ID) 1000
Total energy: -45835.0 ( -125.23 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_1B4B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B4B-query.scw
PDB file :
Tito_Scwrl_1B4B.pdb
: