Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKKTIYFICTGNSCRSQMAEGWGKEILGEGWNVYSAGIETHGVNPKAIEAMKEVDIDISNHTSDLIDNDILKQSDLVVTLCSDADNNCPILPPNVKKEHWGFDDPAGKE------WSEFQRVRDEIKLAIEKFKLR
1JL3 Chain:C ((4-134))
---KIIYFLCTGNSCRSQMAEGWAKQYL--EWKVYSAGIEAHGLNPNAVKAMKEVGIDISNQTSDIIDSDILNNADLVVTLC-------------VKREHWGFDDPARAQGTEEEKWAFFQRVRDEIGNRLKEF---
General information:
TITO was launched using:
RESULT:
Template:
1JL3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53607 for 882 contacts (-60.8/contact) +
2D Compatibility (PS) -12130 + (NN) -5876 + (LL) 208
1D Compatibility (HY) -14800 + (ID) 3950
Total energy: -90155.0 ( -102.22 by residue)
QMean score : 0.614
(partial model without unconserved sides chains):
PDB file :
Tito_1JL3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JL3-query.scw
PDB file :
Tito_Scwrl_1JL3.pdb
: