Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMHQIPTPTMSQVIMLNDSITTAEFMVSALRDFFDKPLEEAQKLMLSIHRDGDGVCGVYPYEIAIYKAVCVRDKA-RARFPLRLMVQEVK
3GQ1 Chain:B ((4-84))
--------PSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD-
General information:
TITO was launched using:
RESULT:
Template:
3GQ1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53302 for 558 contacts (-95.5/contact) +
2D Compatibility (PS) -9136 + (NN) -8347 + (LL) 952
1D Compatibility (HY) -7600 + (ID) 1750
Total energy: -79183.0 ( -141.91 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_3GQ1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GQ1-query.scw
PDB file :
Tito_Scwrl_3GQ1.pdb
: