Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MDRISTETELNWEFVESLNENALSDLEERLEIGFSDAFKDFIKR-SNYGFSQLRYFMVGNESYMFKHVLNFNLESLLIDFMQSLKEWLEPEEIVFANDGYGGYYLWNTTTDVVLFLDTDNGSKKVLLNLNMFLKK--LESRG
2PAG Chain:A ((1-135))
LEEVIEQLREANEPVPVPLELPDEDQLVEIEEQLFINIPFVFKEFLLTVSDVVYGSLEPVTVTDPQ---------SHTYLPEVCATAWDLGVPRELIPICQDG-EDYYCVEEDGTVLLW--SALVTEESWESVWHWARDVWLES--
General information:
TITO was launched using:
RESULT:
Template:
2PAG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81336 for 903 contacts (-90.1/contact) +
2D Compatibility (PS) -13332 + (NN) -4313 + (LL) 1080
1D Compatibility (HY) -7200 + (ID) 1300
Total energy: -106401.0 ( -117.83 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_2PAG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PAG-query.scw
PDB file :
Tito_Scwrl_2PAG.pdb
: