Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIERLVGNLRDLNPLDFNVDHVDLEWFETRKKIARFKTRQGKDIAIRLKDAPKLGLSQGDILFKEEKEIIAVNILDSEVIHIQAKSVAEVAKICYEIGNRHAALYYGESQFEFKTPFEKPTLALLEKLGVQNRVLSSKLDSKERLTVSMPHSEPNFKVSLASDFKVVVK
3NY0 Chain:B ((2-154))
-IIERLVGNLRDLNPLDFSVDHVDLEWFETRKKIARFKTRQGKDIAIRLKDAPKLGLSQGDILFKEEKEIIAVNILDSEVIHIQAKSVAEVAKICYEIGNRHAALYYGESQFEFKTPFEKPTLALLEKLGVQNRVLSSKLDSKERLTVSMPHSE----------------
General information:
TITO was launched using:
RESULT:
Template:
3NY0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54694 for 1032 contacts (-53.0/contact) +
2D Compatibility (PS) -15762 + (NN) -3369 + (LL) 1400
1D Compatibility (HY) -21600 + (ID) 7600
Total energy: -101625.0 ( -98.47 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_3NY0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NY0-query.scw
PDB file :
Tito_Scwrl_3NY0.pdb
: