Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MQKEQEAQEIAKKAVKIVF-----FLGLVVVLLMMINLYMLIN-----QINASAQMSHQIKKIEERLNQEQK---------
1Y96 Chain:A ((1-86))
MSEWMKKGPLEWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFLEDGSMSVTGIMGHAVQTVETMNEGDHRVREKLMHLF
General information:
TITO was launched using:
RESULT:
Template:
1Y96.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31842 for 375 contacts (-84.9/contact) +
2D Compatibility (PS) -6348 + (NN) 5615 + (LL) 0
1D Compatibility (HY) -2000 + (ID) 550
Total energy: -35125.0 ( -93.67 by residue)
QMean score : 0.358
(partial model without unconserved sides chains):
PDB file :
Tito_1Y96.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y96-query.scw
PDB file :
Tito_Scwrl_1Y96.pdb
: