Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNRDHMDMPSLHSLEHLVAEIIRNHA--N--YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVL---KAKEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV
1J6W Chain:A ((3-153))
---LLDSFKVDHTKMNAPAVRIAKTMLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISPMGCRTGFYMSLIGTPNEQKVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNED
General information:
TITO was launched using:
RESULT:
Template:
1J6W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63808 for 1039 contacts (-61.4/contact) +
2D Compatibility (PS) -14739 + (NN) -2666 + (LL) 480
1D Compatibility (HY) -11600 + (ID) 2750
Total energy: -95083.0 ( -91.51 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_1J6W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J6W-query.scw
PDB file :
Tito_Scwrl_1J6W.pdb
: