Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVRGIFEELGEDNFRMFEKNLIDELKTLKTPHIISTGGGIVMHE----NLKGLGTTFYLKMDFETLIKRLNQKEREKRPLL---NNLTQAKELFEKRQALYEKNASFIIDARGGLNNSLKQVLQFIA
3TRF Chain:B ((6-153))
-TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDN-IILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQAMADLVYPTDDLNPRQLATQILVDI
General information:
TITO was launched using:
RESULT:
Template:
3TRF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68315 for 1009 contacts (-67.7/contact) +
2D Compatibility (PS) -15100 + (NN) -5952 + (LL) 68
1D Compatibility (HY) -9200 + (ID) 2550
Total energy: -101049.0 ( -100.15 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_3TRF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TRF-query.scw
PDB file :
Tito_Scwrl_3TRF.pdb
: