Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMREILTNRFFPSLFKKRLDFSNRVVLGLGSNLKNPLKILKSCFLYFKNHSKIGKIFSSPIYINPPFGYTNQPNFYNATIILKTSLGLRHFFALVFYIERRFGRARKRDFKDAPRTLDIDIIAFNQVILRQNDLTLPHPKWSERDSVLVPLTLQQILFKREEW
4AD6 Chain:B ((9-131))
--------------------------LGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHRIRKERW--GPRTLDVDILLYGEEMIDLPKLSVPHPRMNERAFVLIPLNDIAANVVEPRS
General information:
TITO was launched using:
RESULT:
Template:
4AD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77544 for 880 contacts (-88.1/contact) +
2D Compatibility (PS) -13105 + (NN) -7298 + (LL) 2300
1D Compatibility (HY) -11200 + (ID) 2200
Total energy: -109047.0 ( -123.92 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_4AD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AD6-query.scw
PDB file :
Tito_Scwrl_4AD6.pdb
: