Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKMNKVVLHKEYSGFVRFFHWVRALSIFTLIATGFYIAYPFLQPNSSFYKGVYLLQAYVRSFHVMFG----FLLISALIFRTYLFFTKESLME-----RRSFSQLLSPKAW------IDQMKAYFLISDKPHTKGLYNPIQLVAYFTLVVLIVLMSLSGIVLYYNVYHEGLGAFLANAFKWFEALCGGLANVRFIHHLATWGFILFVPVHVYMVFFHSIRYDSSGADSMINGYGYTKE
1P9Q Chain:C ((2-234))
-VSLDKAVIARLRKGGEEFEVLVDPYLARDLKEGKEVNFEDLLAAEEVFKDAKKGERASVDELRKIFGTDDVFEIARKIILEGEVQITAEQRREMLEAKRKQIINFISRNTIDPAPHPPSRIERALEEAKVHIDIFKSVEAQVKDIVKALKPILPLKFEEMEIAIKIPPEHTGRAISALYNF-----GGVTREEWQRD-GSWICVMRIPSGMYGDLMDLLGKVAKG--EALTKVLRRIG
General information:
TITO was launched using:
RESULT:
Template:
1P9Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -167906 for 1505 contacts (-111.6/contact) +
2D Compatibility (PS) -23487 + (NN) -10109 + (LL) 1064
1D Compatibility (HY) -3200 + (ID) 1450
Total energy: -205088.0 ( -136.27 by residue)
QMean score : 0.222
(partial model without unconserved sides chains):
PDB file :
Tito_1P9Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P9Q-query.scw
PDB file :
Tito_Scwrl_1P9Q.pdb
: