Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRFFILFFMGMLGVGFSQTELDLKDLEKKPAGIVRDYYLWRYISDKKTSLENAKKAYELTQNKNSALQKAMQEKGVENSDKSPDAKMPEDIYCKQITLESMLETTDAFQASCIAIALKSKIRDFDKIPIQTFKPLQEKIKEAYPILYEELEILQSKNVSASLFKANAQVFSALFNHLSYEKKLQIFEKHIPIKELNRLLDEDYPAFNRLIYQVILDPKLDHFKDALAKSNATQSNAQTFFILGINEILHKKTSKALKYFERSEAVVKDDDFSKDRAIFWQYLASKKKKTLEHLSQSPALNLYSLYASRKLKTTPSYRIISHIQNLSQENPPFNTYDPFSWQIFKEKTLSLKDEGAFNAMLKSLYYEKSAPELTYLLSQRNKDKIYYYLSPYEGIIEWQNTDERAMAYAIARQESFLLPALI----SRSFALGLMQIMPFNVGPFAKSLGMDNVDLNDMFNPNIALKFGNYYLNHLKKEF----------NHPLFVAYAYNAGPGFLRRWLESSKRFKGKNHFEPWLSMELMPYSETRMYGFRVMLNYLIYQEIFGNFIPIDAFLEQTLNSKDKP |
| 1GBS Chain:A ((59-182)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LCV-EPAVIAGIISRESHAGKVLKNGWGDRGNGFGLMQVDKRSHKPQ------------GTWNGEVHITQGTTILTDFIKRIQKKFPSWTKDQQLKGGISAYNAGAGNVRSYARM------------------DIGTTHDDYANDVVARAQYYKQHGY------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GBS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -59192 for 789 contacts (-75.0/contact) +
2D Compatibility (PS) -11379 + (NN) -5240 + (LL) 32752
1D Compatibility (HY) 1600 + (ID) 1300
Total energy: -42759.0 ( -54.19 by residue)
QMean score : 0.242
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