Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSKDIIKLLNEQVNKEMNSSNLYMSMSSWCYTHSLDGAGLFLFDHAAEEYEHAKKLIIFLNENNVPVQLTSISAPEHKFEGLTQIFQKAYEHEQHISESINNIVDHAIKSKDHATFNFLQWYVAEQHEEEVLFKDILDKIELIGNENHGLYLADQYVKGIAKSRKS
3EGM Chain:D ((15-180))
MLSKDIIKLLNEQVNKEMNSSNLYMSMSSWCYTHSLDGAGLFLFDHAAEEYEHAKKLIIFLNENNVPVQLTSISAPEHKFEGLTQIFQKAYEHEQHISESINNIVDHAIKSKDHATFNFLQWYVAEQHEEEVLFKDILDKIELIGNENHGLYLADQYVKGIAKSRK-
General information:
TITO was launched using:
RESULT:
Template:
3EGM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86669 for 1252 contacts (-69.2/contact) +
2D Compatibility (PS) -18066 + (NN) -10150 + (LL) -28
1D Compatibility (HY) -24000 + (ID) 8300
Total energy: -147213.0 ( -117.58 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_3EGM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EGM-query.scw
PDB file :
Tito_Scwrl_3EGM.pdb
: