Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLYHYYFKTPKSFPLEYLHLCANESHLLRLDFDATNFSHHTPMNTPLKLSVQALERYFLGQLFEFDAPLDLIGTFFQKQVWSALMTIPYGKTKSYDEIAKLINNPKSCRAIGNANRNNPISLIVPCHRVVRKNGALGGYNGGIEVKKWLLEFESKILNERAKNFLIS
1T39 Chain:B ((105-185))
--------------------------------------------------------------------------SFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGH------------
General information:
TITO was launched using:
RESULT:
Template:
1T39.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15824 for 579 contacts (-27.3/contact) +
2D Compatibility (PS) -8935 + (NN) -4173 + (LL) 6328
1D Compatibility (HY) -7600 + (ID) 1800
Total energy: -32004.0 ( -55.27 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_1T39.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T39-query.scw
PDB file :
Tito_Scwrl_1T39.pdb
: