Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVITDLDKALSGLKDGDTILVGGFGLCGIPEYAIDYIYKKGIKDLIVVSNNCGVDDFGLGILLEKKQIKKIIASYVGENKIFESQMLNGEIEVVLTPQGTLAENLRAGGAGIPAYYTPTGVGTLIAQG------------------KESREFNGKEYILERAITGDYGLIKAYKSDTLGNLVFRKTARNFN-PLCAMAAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEKRIEKTTTRSAK
1OPE Chain:B ((2-246))
--KFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCK-AAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSVRVRE
General information:
TITO was launched using:
RESULT:
Template:
1OPE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122831 for 1927 contacts (-63.7/contact) +
2D Compatibility (PS) -24174 + (NN) -7310 + (LL) 336
1D Compatibility (HY) -23200 + (ID) 6850
Total energy: -184029.0 ( -95.50 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_1OPE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OPE-query.scw
PDB file :
Tito_Scwrl_1OPE.pdb
: