Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDGVQHKEDCLEIINPKWIE-TKGSIMYREGCLSVPGFYEEVERFEKVKIEYQNR----FAEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQKHK
1N5N Chain:B ((14-177))
-AILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED-----KSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEV----AEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHR-----
General information:
TITO was launched using:
RESULT:
Template:
1N5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83845 for 1247 contacts (-67.2/contact) +
2D Compatibility (PS) -17084 + (NN) -2495 + (LL) 1220
1D Compatibility (HY) -14400 + (ID) 3950
Total energy: -120554.0 ( -96.68 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_1N5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N5N-query.scw
PDB file :
Tito_Scwrl_1N5N.pdb
: