Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVYPQVLSIAGSDSGGGAGIQADLKAFQTFGVFGTSVITCITAQNTQGVHGVYPLSVESVKAQILAIRDDFSIKAFKMGALCNAQIIECVANALETCDFGLCVLDPVMVAKNGALLLEEEAILSLKKRLLPKTNLLTPNLPEVYALTGVQARDDKSASKAMGVLRDLGVKNAVIKGGHTEHFQGEFSNDWVFLEDAEFILSAKRFNTKNTHGTGCTLSSLIVGLLAQGLDLKNAITKAKELLTIIIQNPLNIGHGHGPLNLWSIKKHV
4JJP Chain:B ((12-246))
-------LTIAGSDSSGGAGIQADLKTFSAIGTYGMSVITAITAQNTKGVFAVEDLNKKIIKKQIEAVFEDIPPRAVKIGMVSSPEIILEIVENLKKYNPKYLVVDPVMI-----YLLKPEAKENLIKYLIPLAYIITPNIPEAEEITGIKIHNVDDMKRVGEEILQLGPKFVLMKGG---------AVDILVGKNIFKVYKS-----------GCTLSSAITSYLALGYEITEAVNLSKIYITEA-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4JJP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -171242 for 1813 contacts (-94.5/contact) +
2D Compatibility (PS) -23281 + (NN) -7626 + (LL) 2420
1D Compatibility (HY) -16000 + (ID) 4250
Total energy: -219979.0 ( -121.33 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_4JJP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JJP-query.scw
PDB file :
Tito_Scwrl_4JJP.pdb
: