Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAQKTLLIITDGIGYRKDSDHNAFFHAKKPTYDLMFKTLPYSLIDTHGLSVGLPKGQMGNSEVGHMCIGAGRVLYQDLVRISLSLQNDELKNNPAFLNTIQKSHVVHLMGLMSDGGVHSHIEHFIALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQMQNICNENIQIATISGRFYAMDRDNRFERIELAYNSLMGLNHTPLSPSEYIQSQYDKNITDEFIIPACFKNYCGMQDDESFIFINFRNDRAREIVSALGQKEFNSFKRQAFKKLHIATMTP-YDNSFP-YPVLFPKESVQNTLAEVVSQHNLTQSHIAETEKYAHVTFFINGGVETP-FKNENRVLIQSPKV-TTYDLKPEMSAKGVTLAVLEQMRL-G-TDLIIVNFANGDMVGHT--------------GNFEASIKAVEAVDACLGEILSLAKE----LDYAMLLTSDHGNCERMKDEN-----QNP-LTNH---TAGSVYCFVLGNGVKSI--K-NGALNNIASSVLKLMGIKAPAT-MDEPLF |
| 2W8D Chain:A ((51-335)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IDGKEVTPFLNKL---AHDNETFYFDNFFH----QTGQ------------GKTSDAEFMMENSLYPLAQGSVFVNK-AQNTLQSVPAILKSKNYTSATF-----HGNTQTFWNRNEMYKAEGIDKFFDSAYYDMNEENTKNYGMKDKPFFKESMPLLESLPQPFYTKFITLSNHFPFGMDEGDTDFPAGDFGDSVVDNYFQSAHYLDQSIEQFFNDLKKDGLYDKSIIVMYGDHYGISENHNKAMAKVLGKDEITDYDNAQLQRVPLFIHAAGVKGEKVHKYAGDVDVAPTILHLLGVDTKDYLMSGSDI |
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General information:
TITO was launched using:
| RESULT:
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Template: 2W8D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -89679 for 1849 contacts (-48.5/contact) +
2D Compatibility (PS) -26227 + (NN) -8935 + (LL) 15140
1D Compatibility (HY) -4000 + (ID) 1600
Total energy: -115301.0 ( -62.36 by residue)
QMean score : 0.369
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