Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDSKKPHYRVSLSEQALNHEKLMRAIVKNLADTPMVLKGETALYLGYGLNRFSEDLDFDCHKKINLLGRVKSAIPNGIILNDIHIKKDTDSVGRYMVRYATKDNKEEQTLKLEISYRDAPKESEVNVIEGMRIAKIERIIDNKLCACF-DGEHTRTKARDLFDLHFLAKHYEEHFNLDLASRLKDFSKDPDKLVSDYLVDVKLDALLNQIMDLEETALELGVMAQLIHKKLEKQSHSLNALQEQQGYSNNDNSLDNSNENTYTPKRRR- |
1KHH Chain:A ((6-198)) | ----------------RWETPYMHSLAAAAAS-----RGGRVLEVGFGMAIAASRVQ-------------QAPIKEHWIIE------------------------CNDGVFQRLQNWALKQPHKVVPLKGLWEEVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKTHAFRLLKPGGILTYCNLTSWGELMKSKY---TDITAMFEETQ--VPALLEAGFQRENICTEVMA-------------LVPPADCRYYAFPQMITPLVTKH |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KHH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -11995 for 1586 contacts (-7.6/contact) +
2D Compatibility (PS) -20152 + (NN) -3003 + (LL) 4932
1D Compatibility (HY) -5200 + (ID) 1150
Total energy: -36568.0 ( -23.06 by residue)
QMean score : 0.329
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