Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKRSSVFSFLVAFLLVVGCSHKMDNKTVAGDVSTKAVQTAPVTTEPAPEKEEPKQEPAPVVEEKPAIESGTIIASIYFDFDKYEIKESDQETLDEIVQKAKEN-HMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALVIKGVEKDMIKTISFGESKPKCVQKTRECYRENRRVDVKLVK |
2W8B Chain:H ((8-105)) | ---------------------------------------------------------------------------VYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVYL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2W8B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -933 for 665 contacts (-1.4/contact) +
2D Compatibility (PS) -10508 + (NN) -5292 + (LL) 5324
1D Compatibility (HY) -4400 + (ID) 1900
Total energy: -17709.0 ( -26.63 by residue)
QMean score : 0.535
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