Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTFLIALALTASLIGAENTKWDYKNKENGPHRWDKLHKDFEVCKSGKSQSPINIEHYYHTQDKADLQFKYAASKPKAVFFTHHTLKASFEPTNHINYRGHDYVLDNVHFHAPMEFLINNKTRPLSAHFVHKDAKGRLLVLAIGFEEGKENPNLDPILEGIQKKQNLKEVALDAFLPKSINYYHFNGSLTAPPCTEGVAWFVIEEPLEVSAKQLAEIKKRMKNSPNQRPVQPDYNTVIIKSSAETR
4YHA Chain:F ((10-234))
----------------------WDYKNKENGPHRWDKLHKDFEVCKSGKSQSPINIEHYYHTQDKADLQFKYAASKPKAVFFTHHTLKASFEPTNHINYRGHDYVLDNVHFHAPMEFLINNKTRPLSAHFVHKDAKGRLLVLAIGFEE--ENPNLDPILEGIQKK--------DAFLPKSINYYHFNGSLTAPPCTEGVAWFVIEEPLEVSAKQLAEIKKRMKNSPNQRPVQPDYNTVIIKSSAETR
General information:
TITO was launched using:
RESULT:
Template:
4YHA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93312 for 1650 contacts (-56.6/contact) +
2D Compatibility (PS) -22879 + (NN) -11594 + (LL) 2988
1D Compatibility (HY) -26400 + (ID) 10750
Total energy: -161947.0 ( -98.15 by residue)
QMean score : 0.441
(partial model without unconserved sides chains):
PDB file :
Tito_4YHA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YHA-query.scw
PDB file :
Tito_Scwrl_4YHA.pdb
: